J5_4V6S_001

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V6S|1|AB|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6S_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.2837

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V6S|1|AB|C|47
4V6S|1|AB|G|48
4V6S|1|AB|A|49
4V6S|1|AB|U|50
4V6S|1|AB|G|51
4V6S|1|AB|A|52
4V6S|1|AB|A|53
4V6S|1|AB|G|54
*
4V6S|1|AB|C|116
4V6S|1|AB|G|117
4V6S|1|AB|A|118
4V6S|1|AB|A|119
4V6S|1|AB|U|120
4V6S|1|AB|G|121
*
4V6S|1|AB|C|130
4V6S|1|AB|A|131
*
4V6S|1|AB|U|148
4V6S|1|AB|A|149
4V6S|1|AB|U|150
*
4V6S|1|AB|A|176
4V6S|1|AB|G|177
4V6S|1|AB|G|178

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L34

Chain AV

50S ribosomal protein L23