J5_4V6S_004

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

4V6S|1|AB|C|1675, 4V6S|1|AB|A|1678, 4V6S|1|AB|A|1759, 4V6S|1|AB|A|1762, 4V6S|1|AB|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|G|1674
4V6S|1|AB|C|1675
4V6S|1|AB|A|1676
4V6S|1|AB|A|1677
4V6S|1|AB|A|1678
4V6S|1|AB|A|1679
4V6S|1|AB|U|1680
4V6S|1|AB|G|1681
4V6S|1|AB|G|1682
*
4V6S|1|AB|C|1706
4V6S|1|AB|G|1707
*
4V6S|1|AB|U|1751
4V6S|1|AB|C|1752
*
4V6S|1|AB|G|1756
4V6S|1|AB|A|1757
4V6S|1|AB|U|1758
4V6S|1|AB|A|1759
4V6S|1|AB|C|1760
4V6S|1|AB|C|1761
4V6S|1|AB|A|1762
4V6S|1|AB|G|1763
4V6S|1|AB|C|1764
*
4V6S|1|AB|G|1988
4V6S|1|AB|G|1989
4V6S|1|AB|C|1990

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L14

Chain AR

50S ribosomal protein L19

Chain BA

Small subunit ribosomal RNA; SSU rRNA