J5_4V6S_009
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V6S|1|BA|C|352, 4V6S|1|BA|A|353
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6S_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.3006
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6S|1|BA|C|58
4V6S|1|BA|A|59
4V6S|1|BA|A|60
4V6S|1|BA|G|61
*
4V6S|1|BA|C|106
4V6S|1|BA|G|107
4V6S|1|BA|G|108
4V6S|1|BA|A|109
4V6S|1|BA|C|110
4V6S|1|BA|G|111
4V6S|1|BA|G|112
4V6S|1|BA|G|113
*
4V6S|1|BA|C|314
4V6S|1|BA|A|315
4V6S|1|BA|C|316
*
4V6S|1|BA|G|337
4V6S|1|BA|A|338
4V6S|1|BA|C|339
*
4V6S|1|BA|G|350
4V6S|1|BA|G|351
4V6S|1|BA|C|352
4V6S|1|BA|A|353
4V6S|1|BA|G|354
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AM
- 50S ribosomal protein L14
- Chain BR
- 30S ribosomal protein S16
- Chain BV
- 30S ribosomal protein S20
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