J5_4V6T_002

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6T_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.081

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V6T|1|AA|C|36
4V6T|1|AA|U|37
4V6T|1|AA|G|38
4V6T|1|AA|G|39
*
4V6T|1|AA|C|403
4V6T|1|AA|G|404
4V6T|1|AA|U|405
4V6T|1|AA|G|406
*
4V6T|1|AA|C|436
4V6T|1|AA|U|437
4V6T|1|AA|U|438
4V6T|1|AA|U|439
4V6T|1|AA|C|440
4V6T|1|AA|A|441
4V6T|1|AA|G|442
*
4V6T|1|AA|C|492
4V6T|1|AA|A|493
4V6T|1|AA|G|494
4V6T|1|AA|A|495
4V6T|1|AA|A|496
4V6T|1|AA|G|497
4V6T|1|AA|A|498
4V6T|1|AA|A|499
4V6T|1|AA|G|500
*
4V6T|1|AA|C|545
4V6T|1|AA|A|546
4V6T|1|AA|A|547
4V6T|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain AY

elongation factor G