J5_4V6X_001
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 4V6X|1|A8|U|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6X_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.1497
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6X|1|A5|G|19
4V6X|1|A5|U|20
4V6X|1|A5|G|21
*
4V6X|1|A8|C|35
4V6X|1|A8|G|36
4V6X|1|A8|A|37
4V6X|1|A8|U|38
4V6X|1|A8|G|39
4V6X|1|A8|A|40
4V6X|1|A8|A|41
4V6X|1|A8|G|42
*
4V6X|1|A8|C|101
4V6X|1|A8|G|102
4V6X|1|A8|A|103
4V6X|1|A8|A|104
4V6X|1|A8|C|105
4V6X|1|A8|G|106
*
4V6X|1|A8|C|113
4V6X|1|A8|G|114
*
4V6X|1|A8|U|136
4V6X|1|A8|A|137
4V6X|1|A8|C|138
Current chains
- Chain A5
- 28S ribosomal RNA
- Chain A8
- 5.8S ribosomal RNA
Nearby chains
- Chain CN
- 60S ribosomal protein L15
- Chain CX
- 60S ribosomal protein L23a
- Chain Ch
- 60S ribosomal protein L35
- Chain Cj
- 60S ribosomal protein L37
- Chain Cl
- 60S ribosomal protein L39
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