J5_4V6X_003
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 4V6X|1|A5|G|3620, 4V6X|1|A5|G|3625
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6X_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1368
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6X|1|A5|G|2855
4V6X|1|A5|C|2856
4V6X|1|A5|A|2857
4V6X|1|A5|A|2858
4V6X|1|A5|G|2859
4V6X|1|A5|C|2860
4V6X|1|A5|C|2861
4V6X|1|A5|G|2862
4V6X|1|A5|G|2863
*
4V6X|1|A5|U|2887
4V6X|1|A5|G|2888
*
4V6X|1|A5|U|3613
4V6X|1|A5|G|3614
*
4V6X|1|A5|C|3618
4V6X|1|A5|G|3619
4V6X|1|A5|G|3620
4V6X|1|A5|A|3621
4V6X|1|A5|C|3622
4V6X|1|A5|C|3623
4V6X|1|A5|A|3624
4V6X|1|A5|G|3625
4V6X|1|A5|G|3626
*
4V6X|1|A5|C|3835
4V6X|1|A5|A|3836
4V6X|1|A5|C|3837
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain CB
- 60S ribosomal protein L3
- Chain CR
- 60S ribosomal protein L19
- Chain CV
- 60S ribosomal protein L23
- Chain CW
- 60S ribosomal protein L24
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