Loop J5_4V6X

3D structure

PDB id: 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å

Loop

Sequence: AGAAGACCC*GGGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 42 nucleotides
Bulged bases: 4V6X|1|A5|A|3908, 4V6X|1|A5|A|4394, 4V6X|1|A5|U|4395, 4V6X|1|A5|U|4450, 4V6X|1|A5|G|4451, 4V6X|1|A5|U|4452, 4V6X|1|A5|U|4555, 4V6X|1|A5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V6X|1|A5|A|3903
4V6X|1|A5|G|3904
4V6X|1|A5|A|3905
4V6X|1|A5|A|3906
4V6X|1|A5|G|3907
4V6X|1|A5|A|3908
4V6X|1|A5|C|3909
4V6X|1|A5|C|3910
4V6X|1|A5|C|3911
*
4V6X|1|A5|G|4391
4V6X|1|A5|G|4392
4V6X|1|A5|G|4393
4V6X|1|A5|A|4394
4V6X|1|A5|U|4395
4V6X|1|A5|A|4396
4V6X|1|A5|A|4397
4V6X|1|A5|C|4398
4V6X|1|A5|U|4399
4V6X|1|A5|G|4400
*
4V6X|1|A5|C|4444
4V6X|1|A5|U|4445
4V6X|1|A5|U|4446
4V6X|1|A5|C|4447
4V6X|1|A5|G|4448
4V6X|1|A5|A|4449
4V6X|1|A5|U|4450
4V6X|1|A5|G|4451
4V6X|1|A5|U|4452
4V6X|1|A5|C|4453
*
4V6X|1|A5|G|4528
4V6X|1|A5|G|4529
4V6X|1|A5|U|4530
4V6X|1|A5|U|4531
4V6X|1|A5|U|4532
4V6X|1|A5|A|4533
4V6X|1|A5|G|4534
*
4V6X|1|A5|U|4552
4V6X|1|A5|A|4553
4V6X|1|A5|G|4554
4V6X|1|A5|U|4555
4V6X|1|A5|U|4556
4V6X|1|A5|U|4557

Current chains

Chain A5: 28S ribosomal RNA

Nearby chains

Chain CA: 60S ribosomal protein L8
Chain CB: 60S ribosomal protein L3
Chain CC: 60S ribosomal protein L4
Chain CP: 60S ribosomal protein L17
Chain Cb: 60S ribosomal protein L29

J5_4V6X_004