J5_4V6X_005
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 4V6X|1|A5|G|3922, 4V6X|1|A5|A|4376, 4V6X|1|A5|G|4377, 4V6X|1|A5|A|4378, 4V6X|1|A5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6X_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3492
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6X|1|A5|U|3920
4V6X|1|A5|U|3921
4V6X|1|A5|G|3922
4V6X|1|A5|A|3923
*
4V6X|1|A5|U|4188
4V6X|1|A5|U|4189
4V6X|1|A5|U|4190
4V6X|1|A5|G|4191
*
4V6X|1|A5|C|4204
4V6X|1|A5|A|4205
*
4V6X|1|A5|U|4227
4V6X|1|A5|G|4228
*
4V6X|1|A5|C|4375
4V6X|1|A5|A|4376
4V6X|1|A5|G|4377
4V6X|1|A5|A|4378
4V6X|1|A5|A|4379
4V6X|1|A5|A|4380
4V6X|1|A5|A|4381
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain BC
- Transfer RNA; tRNA
- Chain CA
- 60S ribosomal protein L8
- Chain CN
- 60S ribosomal protein L15
- Chain CQ
- 60S ribosomal protein L18
- Chain CT
- 60S ribosomal protein L21
- Chain Ca
- 60S ribosomal protein L27a
- Chain Co
- 60S ribosomal protein L36a
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