J5_4V6X_008

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUU*AUGCCGACGGG*UG*CCG*CGACC

Length

43 nucleotides

Bulged bases

4V6X|1|B2|G|126, 4V6X|1|B2|U|128, 4V6X|1|B2|C|129, 4V6X|1|B2|G|130, 4V6X|1|B2|C|131, 4V6X|1|B2|U|132, 4V6X|1|B2|C|133, 4V6X|1|B2|C|134, 4V6X|1|B2|U|135, 4V6X|1|B2|C|136, 4V6X|1|B2|U|137, 4V6X|1|B2|C|138, 4V6X|1|B2|C|139, 4V6X|1|B2|C|140, 4V6X|1|B2|C|142

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|B2|G|123
4V6X|1|B2|U|124
4V6X|1|B2|C|125
4V6X|1|B2|G|126
4V6X|1|B2|C|127
4V6X|1|B2|U|128
4V6X|1|B2|C|129
4V6X|1|B2|G|130
4V6X|1|B2|C|131
4V6X|1|B2|U|132
4V6X|1|B2|C|133
4V6X|1|B2|C|134
4V6X|1|B2|U|135
4V6X|1|B2|C|136
4V6X|1|B2|U|137
4V6X|1|B2|C|138
4V6X|1|B2|C|139
4V6X|1|B2|C|140
4V6X|1|B2|A|141
4V6X|1|B2|C|142
4V6X|1|B2|U|143
4V6X|1|B2|U|144
*
4V6X|1|B2|A|175
4V6X|1|B2|U|176
4V6X|1|B2|G|177
4V6X|1|B2|C|178
4V6X|1|B2|C|179
4V6X|1|B2|G|180
4V6X|1|B2|A|181
4V6X|1|B2|C|182
4V6X|1|B2|G|183
4V6X|1|B2|G|184
4V6X|1|B2|G|185
*
4V6X|1|B2|U|214
4V6X|1|B2|G|215
*
4V6X|1|B2|C|310
4V6X|1|B2|C|311
4V6X|1|B2|G|312
*
4V6X|1|B2|C|337
4V6X|1|B2|G|338
4V6X|1|B2|A|339
4V6X|1|B2|C|340
4V6X|1|B2|C|341

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8