J5_4V71_002

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

4V71|1|AA|G|38

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V71_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.257

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V71|1|AA|C|36
4V71|1|AA|U|37
4V71|1|AA|G|38
4V71|1|AA|G|39
*
4V71|1|AA|C|403
4V71|1|AA|G|404
4V71|1|AA|U|405
4V71|1|AA|G|406
*
4V71|1|AA|C|436
4V71|1|AA|U|437
4V71|1|AA|U|438
4V71|1|AA|U|439
4V71|1|AA|C|440
4V71|1|AA|A|441
4V71|1|AA|G|442
*
4V71|1|AA|C|492
4V71|1|AA|A|493
4V71|1|AA|G|494
4V71|1|AA|A|495
4V71|1|AA|A|496
4V71|1|AA|G|497
4V71|1|AA|A|498
4V71|1|AA|A|499
4V71|1|AA|G|500
*
4V71|1|AA|C|545
4V71|1|AA|A|546
4V71|1|AA|A|547
4V71|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12