J5_4V71_004

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V71|1|BA|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V71_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1344

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V71|1|BA|C|47
4V71|1|BA|G|48
4V71|1|BA|A|49
4V71|1|BA|U|50
4V71|1|BA|G|51
4V71|1|BA|A|52
4V71|1|BA|A|53
4V71|1|BA|G|54
*
4V71|1|BA|C|116
4V71|1|BA|G|117
4V71|1|BA|A|118
4V71|1|BA|A|119
4V71|1|BA|U|120
4V71|1|BA|G|121
*
4V71|1|BA|C|130
4V71|1|BA|A|131
*
4V71|1|BA|U|148
4V71|1|BA|A|149
4V71|1|BA|U|150
*
4V71|1|BA|A|176
4V71|1|BA|G|177
4V71|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34