J5_4V71_009

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4V71|1|BA|A|2060, 4V71|1|BA|A|2448, 4V71|1|BA|U|2449, 4V71|1|BA|G|2502, 4V71|1|BA|U|2585

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V71|1|BA|G|2057
4V71|1|BA|A|2058
4V71|1|BA|A|2059
4V71|1|BA|A|2060
4V71|1|BA|G|2061
4V71|1|BA|A|2062
4V71|1|BA|C|2063
4V71|1|BA|C|2064
*
4V71|1|BA|G|2446
4V71|1|BA|G|2447
4V71|1|BA|A|2448
4V71|1|BA|U|2449
4V71|1|BA|A|2450
4V71|1|BA|A|2451
4V71|1|BA|C|2452
4V71|1|BA|A|2453
*
4V71|1|BA|U|2500
4V71|1|BA|C|2501
4V71|1|BA|G|2502
4V71|1|BA|A|2503
4V71|1|BA|U|2504
4V71|1|BA|G|2505
4V71|1|BA|U|2506
*
4V71|1|BA|G|2583
4V71|1|BA|U|2584
4V71|1|BA|U|2585
4V71|1|BA|U|2586
4V71|1|BA|A|2587
4V71|1|BA|G|2588
*
4V71|1|BA|C|2606
4V71|1|BA|G|2607
4V71|1|BA|G|2608
4V71|1|BA|U|2609
4V71|1|BA|C|2610
4V71|1|BA|C|2611

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15