J5_4V72_004

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V72|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V72_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.204

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V72|1|BA|C|47
4V72|1|BA|G|48
4V72|1|BA|A|49
4V72|1|BA|U|50
4V72|1|BA|G|51
4V72|1|BA|A|52
4V72|1|BA|A|53
4V72|1|BA|G|54
*
4V72|1|BA|C|116
4V72|1|BA|G|117
4V72|1|BA|A|118
4V72|1|BA|A|119
4V72|1|BA|U|120
4V72|1|BA|G|121
*
4V72|1|BA|C|130
4V72|1|BA|A|131
*
4V72|1|BA|U|148
4V72|1|BA|A|149
4V72|1|BA|U|150
*
4V72|1|BA|A|176
4V72|1|BA|G|177
4V72|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34