J5_4V74_004

3D structure

PDB id

4V74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V74|1|BA|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V74_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1247

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V74|1|BA|C|47
4V74|1|BA|G|48
4V74|1|BA|A|49
4V74|1|BA|U|50
4V74|1|BA|G|51
4V74|1|BA|A|52
4V74|1|BA|A|53
4V74|1|BA|G|54
*
4V74|1|BA|C|116
4V74|1|BA|G|117
4V74|1|BA|A|118
4V74|1|BA|A|119
4V74|1|BA|U|120
4V74|1|BA|G|121
*
4V74|1|BA|C|130
4V74|1|BA|A|131
*
4V74|1|BA|U|148
4V74|1|BA|A|149
4V74|1|BA|U|150
*
4V74|1|BA|A|176
4V74|1|BA|G|177
4V74|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BY

50S ribosomal protein L29