3D structure

PDB id
4V77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
4V77|1|AA|U|439
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V77_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.1695
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

4V77|1|AA|C|36
4V77|1|AA|U|37
4V77|1|AA|G|38
4V77|1|AA|G|39
*
4V77|1|AA|C|403
4V77|1|AA|G|404
4V77|1|AA|U|405
4V77|1|AA|G|406
*
4V77|1|AA|C|436
4V77|1|AA|U|437
4V77|1|AA|U|438
4V77|1|AA|U|439
4V77|1|AA|C|440
4V77|1|AA|A|441
4V77|1|AA|G|442
*
4V77|1|AA|C|492
4V77|1|AA|A|493
4V77|1|AA|G|494
4V77|1|AA|A|495
4V77|1|AA|A|496
4V77|1|AA|G|497
4V77|1|AA|A|498
4V77|1|AA|A|499
4V77|1|AA|G|500
*
4V77|1|AA|C|545
4V77|1|AA|A|546
4V77|1|AA|A|547
4V77|1|AA|G|548

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AL
30S ribosomal protein S12

Coloring options:


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