J5_4V78_002

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V78_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1716

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V78|1|AA|C|36
4V78|1|AA|U|37
4V78|1|AA|G|38
4V78|1|AA|G|39
*
4V78|1|AA|C|403
4V78|1|AA|G|404
4V78|1|AA|U|405
4V78|1|AA|G|406
*
4V78|1|AA|C|436
4V78|1|AA|U|437
4V78|1|AA|U|438
4V78|1|AA|U|439
4V78|1|AA|C|440
4V78|1|AA|A|441
4V78|1|AA|G|442
*
4V78|1|AA|C|492
4V78|1|AA|A|493
4V78|1|AA|G|494
4V78|1|AA|A|495
4V78|1|AA|A|496
4V78|1|AA|G|497
4V78|1|AA|A|498
4V78|1|AA|A|499
4V78|1|AA|G|500
*
4V78|1|AA|C|545
4V78|1|AA|A|546
4V78|1|AA|A|547
4V78|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12