J5_4V78_003

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

4V78|1|AA|A|109, 4V78|1|AA|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V78_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.2689

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V78|1|AA|C|58
4V78|1|AA|A|59
4V78|1|AA|A|60
4V78|1|AA|G|61
*
4V78|1|AA|C|106
4V78|1|AA|G|107
4V78|1|AA|G|108
4V78|1|AA|A|109
4V78|1|AA|C|110
4V78|1|AA|G|111
4V78|1|AA|G|112
4V78|1|AA|G|113
*
4V78|1|AA|C|314
4V78|1|AA|A|315
4V78|1|AA|C|316
*
4V78|1|AA|G|337
4V78|1|AA|A|338
4V78|1|AA|C|339
*
4V78|1|AA|G|350
4V78|1|AA|G|351
4V78|1|AA|C|352
4V78|1|AA|A|353
4V78|1|AA|G|354

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19