Loop J5_4V78

3D structure

PDB id: 4V78 (explore in PDB, NAKB, or RNA 3D Hub)
Description: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å

Loop

Sequence: GAAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGUCC
Length: 38 nucleotides
Bulged bases: 4V78|1|BA|A|2062, 4V78|1|BA|A|2448, 4V78|1|BA|U|2449, 4V78|1|BA|U|2504, 4V78|1|BA|U|2585, 4V78|1|BA|U|2586, 4V78|1|BA|U|2609
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V78|1|BA|G|2057
4V78|1|BA|A|2058
4V78|1|BA|A|2059
4V78|1|BA|A|2060
4V78|1|BA|G|2061
4V78|1|BA|A|2062
4V78|1|BA|C|2063
4V78|1|BA|C|2064
*
4V78|1|BA|G|2446
4V78|1|BA|G|2447
4V78|1|BA|A|2448
4V78|1|BA|U|2449
4V78|1|BA|A|2450
4V78|1|BA|A|2451
4V78|1|BA|C|2452
4V78|1|BA|A|2453
4V78|1|BA|G|2454
*
4V78|1|BA|C|2498
4V78|1|BA|C|2499
4V78|1|BA|U|2500
4V78|1|BA|C|2501
4V78|1|BA|G|2502
4V78|1|BA|A|2503
4V78|1|BA|U|2504
4V78|1|BA|G|2505
4V78|1|BA|U|2506
*
4V78|1|BA|G|2583
4V78|1|BA|U|2584
4V78|1|BA|U|2585
4V78|1|BA|U|2586
4V78|1|BA|A|2587
4V78|1|BA|G|2588
*
4V78|1|BA|C|2606
4V78|1|BA|G|2607
4V78|1|BA|G|2608
4V78|1|BA|U|2609
4V78|1|BA|C|2610
4V78|1|BA|C|2611

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain A1: Transfer RNA; tRNA
Chain B0: 50S ribosomal protein L32
Chain BC: 50S ribosomal protein L2
Chain BD: 50S ribosomal protein L3
Chain BE: 50S ribosomal protein L4

J5_4V78_011