J5_4V79_002

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V79_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1314

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V79|1|AA|C|36
4V79|1|AA|U|37
4V79|1|AA|G|38
4V79|1|AA|G|39
*
4V79|1|AA|C|403
4V79|1|AA|G|404
4V79|1|AA|U|405
4V79|1|AA|G|406
*
4V79|1|AA|C|436
4V79|1|AA|U|437
4V79|1|AA|U|438
4V79|1|AA|U|439
4V79|1|AA|C|440
4V79|1|AA|A|441
4V79|1|AA|G|442
*
4V79|1|AA|C|492
4V79|1|AA|A|493
4V79|1|AA|G|494
4V79|1|AA|A|495
4V79|1|AA|A|496
4V79|1|AA|G|497
4V79|1|AA|A|498
4V79|1|AA|A|499
4V79|1|AA|G|500
*
4V79|1|AA|C|545
4V79|1|AA|A|546
4V79|1|AA|A|547
4V79|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12