J5_4V7B_001

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7B_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0556

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V7B|1|AA|C|36
4V7B|1|AA|U|37
4V7B|1|AA|G|38
4V7B|1|AA|G|39
*
4V7B|1|AA|C|403
4V7B|1|AA|G|404
4V7B|1|AA|U|405
4V7B|1|AA|G|406
*
4V7B|1|AA|C|436
4V7B|1|AA|U|437
4V7B|1|AA|U|438
4V7B|1|AA|U|439
4V7B|1|AA|C|440
*
4V7B|1|AA|G|497
4V7B|1|AA|A|498
4V7B|1|AA|A|499
4V7B|1|AA|G|500
*
4V7B|1|AA|C|545
4V7B|1|AA|A|546
4V7B|1|AA|A|547
4V7B|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain AY

Elongation Factor G