J5_4V7C_002

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CAAGU*GCGGACGGG*CAC*GAC*GGCAG

Length

25 nucleotides

Bulged bases

4V7C|1|AA|A|60, 4V7C|1|AA|A|109, 4V7C|1|AA|C|352, 4V7C|1|AA|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7C_002 not in the Motif Atlas

Homologous match to J5_6CZR_008

Geometric discrepancy: 0.2254

The information below is about J5_6CZR_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7C|1|AA|C|58
4V7C|1|AA|A|59
4V7C|1|AA|A|60
4V7C|1|AA|G|61
4V7C|1|AA|U|62
*
4V7C|1|AA|G|105
4V7C|1|AA|C|106
4V7C|1|AA|G|107
4V7C|1|AA|G|108
4V7C|1|AA|A|109
4V7C|1|AA|C|110
4V7C|1|AA|G|111
4V7C|1|AA|G|112
4V7C|1|AA|G|113
*
4V7C|1|AA|C|314
4V7C|1|AA|A|315
4V7C|1|AA|C|316
*
4V7C|1|AA|G|337
4V7C|1|AA|A|338
4V7C|1|AA|C|339
*
4V7C|1|AA|G|350
4V7C|1|AA|G|351
4V7C|1|AA|C|352
4V7C|1|AA|A|353
4V7C|1|AA|G|354

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20

Chain BM

50S ribosomal protein L14