J5_4V7D_011

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7D_011 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1171

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V7D|1|BA|C|36
4V7D|1|BA|U|37
4V7D|1|BA|G|38
4V7D|1|BA|G|39
*
4V7D|1|BA|C|403
4V7D|1|BA|G|404
4V7D|1|BA|U|405
4V7D|1|BA|G|406
*
4V7D|1|BA|C|436
4V7D|1|BA|U|437
4V7D|1|BA|U|438
4V7D|1|BA|U|439
4V7D|1|BA|C|440
4V7D|1|BA|A|441
4V7D|1|BA|G|442
*
4V7D|1|BA|C|492
4V7D|1|BA|A|493
4V7D|1|BA|G|494
4V7D|1|BA|A|495
4V7D|1|BA|A|496
4V7D|1|BA|G|497
4V7D|1|BA|A|498
4V7D|1|BA|A|499
4V7D|1|BA|G|500
*
4V7D|1|BA|C|545
4V7D|1|BA|A|546
4V7D|1|BA|A|547
4V7D|1|BA|G|548

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12