J5_4V7E_001
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UCAGGCGG*CGAUGAAG*UGAACG*CG*CACGCCUG
- Length
- 32 nucleotides
- Bulged bases
- 4V7E|1|Ac|U|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|U|14
4V7E|1|Aa|C|15
4V7E|1|Aa|A|16
4V7E|1|Aa|G|17
4V7E|1|Aa|G|18
4V7E|1|Aa|C|19
4V7E|1|Aa|G|20
4V7E|1|Aa|G|21
*
4V7E|1|Ac|C|35
4V7E|1|Ac|G|36
4V7E|1|Ac|A|37
4V7E|1|Ac|U|38
4V7E|1|Ac|G|39
4V7E|1|Ac|A|40
4V7E|1|Ac|A|41
4V7E|1|Ac|G|42
*
4V7E|1|Ac|U|102
4V7E|1|Ac|G|103
4V7E|1|Ac|A|104
4V7E|1|Ac|A|105
4V7E|1|Ac|C|106
4V7E|1|Ac|G|107
*
4V7E|1|Ac|C|115
4V7E|1|Ac|G|116
*
4V7E|1|Ac|C|139
4V7E|1|Ac|A|140
4V7E|1|Ac|C|141
4V7E|1|Ac|G|142
4V7E|1|Ac|C|143
4V7E|1|Ac|C|144
4V7E|1|Ac|U|145
4V7E|1|Ac|G|146
Current chains
- Chain Aa
- 60S ribosomal RNA
- Chain Ac
- 5.8S ribosomal RNA
Nearby chains
- Chain CG
- 60S ribosomal protein L8E
- Chain CN
- 60S ribosomal protein L15E
- Chain CX
- 60S ribosomal protein L23
- Chain Ch
- 60S ribosomal protein L29
- Chain Cj
- 60S ribosomal protein L37E
- Chain Cl
- 60S ribosomal protein L39E
Coloring options: