Loop J5_4V7E

3D structure

PDB id: 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
Description: Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å

Loop

Sequence: AGAAGACCC*GGGAUUACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 42 nucleotides
Bulged bases: 4V7E|1|Aa|A|2403, 4V7E|1|Aa|A|2819, 4V7E|1|Aa|U|2875, 4V7E|1|Aa|U|2980, 4V7E|1|Aa|U|2981
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V7E|1|Aa|A|2398
4V7E|1|Aa|G|2399
4V7E|1|Aa|A|2400
4V7E|1|Aa|A|2401
4V7E|1|Aa|G|2402
4V7E|1|Aa|A|2403
4V7E|1|Aa|C|2404
4V7E|1|Aa|C|2405
4V7E|1|Aa|C|2406
*
4V7E|1|Aa|G|2816
4V7E|1|Aa|G|2817
4V7E|1|Aa|G|2818
4V7E|1|Aa|A|2819
4V7E|1|Aa|U|2820
4V7E|1|Aa|U|2821
4V7E|1|Aa|A|2822
4V7E|1|Aa|C|2823
4V7E|1|Aa|U|2824
4V7E|1|Aa|G|2825
*
4V7E|1|Aa|C|2869
4V7E|1|Aa|U|2870
4V7E|1|Aa|U|2871
4V7E|1|Aa|C|2872
4V7E|1|Aa|G|2873
4V7E|1|Aa|A|2874
4V7E|1|Aa|U|2875
4V7E|1|Aa|G|2876
4V7E|1|Aa|U|2877
4V7E|1|Aa|C|2878
*
4V7E|1|Aa|G|2953
4V7E|1|Aa|G|2954
4V7E|1|Aa|U|2955
4V7E|1|Aa|U|2956
4V7E|1|Aa|U|2957
4V7E|1|Aa|A|2958
4V7E|1|Aa|G|2959
*
4V7E|1|Aa|U|2977
4V7E|1|Aa|A|2978
4V7E|1|Aa|G|2979
4V7E|1|Aa|U|2980
4V7E|1|Aa|U|2981
4V7E|1|Aa|U|2982

Current chains

Chain Aa: 60S ribosomal RNA

Nearby chains

Chain Ae: Transfer RNA; tRNA
Chain CA: 60S ribosomal protein L2
Chain CB: 60S ribosomal protein L3
Chain CC: 60S ribosomal protein L4
Chain CI: 60S ribosomal protein L16
Chain CP: 60S ribosomal protein L22
Chain Cb: 60S ribosomal protein L29E

J5_4V7E_003