J5_4V7E_004
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UUGA*UUUGG*CCAA*UG*CAGAAAA
- Length
- 22 nucleotides
- Bulged bases
- 4V7E|1|Aa|G|2417, 4V7E|1|Aa|C|2629, 4V7E|1|Aa|A|2801, 4V7E|1|Aa|G|2802, 4V7E|1|Aa|A|2803, 4V7E|1|Aa|A|2804
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|U|2415
4V7E|1|Aa|U|2416
4V7E|1|Aa|G|2417
4V7E|1|Aa|A|2418
*
4V7E|1|Aa|U|2614
4V7E|1|Aa|U|2615
4V7E|1|Aa|U|2616
4V7E|1|Aa|G|2617
4V7E|1|Aa|G|2618
*
4V7E|1|Aa|C|2628
4V7E|1|Aa|C|2629
4V7E|1|Aa|A|2630
4V7E|1|Aa|A|2631
*
4V7E|1|Aa|U|2653
4V7E|1|Aa|G|2654
*
4V7E|1|Aa|C|2800
4V7E|1|Aa|A|2801
4V7E|1|Aa|G|2802
4V7E|1|Aa|A|2803
4V7E|1|Aa|A|2804
4V7E|1|Aa|A|2805
4V7E|1|Aa|A|2806
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ae
- Transfer RNA; tRNA
- Chain CA
- 60S ribosomal protein L2
- Chain CI
- 60S ribosomal protein L16
- Chain CN
- 60S ribosomal protein L15E
- Chain CT
- 60S ribosomal protein L21E
- Chain Ca
- 60S ribosomal protein L15
- Chain Cb
- 60S ribosomal protein L29E
- Chain Co
- 60S ribosomal protein L44E
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