Loop J5_4V7E

3D structure

PDB id: 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
Description: Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å

Loop

Sequence: CUUGU*AAAUAACAAUACC*GGUAAUUGGAAUGAG*CGAGGAUCCAU*AUAG
Length: 48 nucleotides
Bulged bases: 4V7E|1|Ad|U|546, 4V7E|1|Ad|C|548
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V7E|1|Ad|C|31
4V7E|1|Ad|U|32
4V7E|1|Ad|U|33
4V7E|1|Ad|G|34
4V7E|1|Ad|U|35
*
4V7E|1|Ad|A|477
4V7E|1|Ad|A|478
4V7E|1|Ad|A|479
4V7E|1|Ad|U|480
4V7E|1|Ad|A|481
4V7E|1|Ad|A|482
4V7E|1|Ad|C|483
4V7E|1|Ad|A|484
4V7E|1|Ad|A|485
4V7E|1|Ad|U|486
4V7E|1|Ad|A|487
4V7E|1|Ad|C|488
4V7E|1|Ad|C|489
*
4V7E|1|Ad|G|506
4V7E|1|Ad|G|507
4V7E|1|Ad|U|508
4V7E|1|Ad|A|509
4V7E|1|Ad|A|510
4V7E|1|Ad|U|511
4V7E|1|Ad|U|512
4V7E|1|Ad|G|513
4V7E|1|Ad|G|514
4V7E|1|Ad|A|515
4V7E|1|Ad|A|516
4V7E|1|Ad|U|517
4V7E|1|Ad|G|518
4V7E|1|Ad|A|519
4V7E|1|Ad|G|520
*
4V7E|1|Ad|C|540
4V7E|1|Ad|G|541
4V7E|1|Ad|A|542
4V7E|1|Ad|G|543
4V7E|1|Ad|G|544
4V7E|1|Ad|A|545
4V7E|1|Ad|U|546
4V7E|1|Ad|C|547
4V7E|1|Ad|C|548
4V7E|1|Ad|A|549
4V7E|1|Ad|U|550
*
4V7E|1|Ad|A|596
4V7E|1|Ad|U|597
4V7E|1|Ad|A|598
4V7E|1|Ad|G|599

Current chains

Chain Ad: 18S ribosomal RNA

Nearby chains

Chain BJ: 40S ribosomal protein S4
Chain BX: 40S ribosomal protein S12
Chain BY: 40S ribosomal protein S24E
Chain Be: 40S ribosomal protein S30E

J5_4V7E_005