Loop J5_4V7E

3D structure

PDB id: 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
Description: Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å

Loop

Sequence: UGGUACGUGCUACUCG*CGUGCAACAAACC*GCG*CGGAUCGCAC*GCGACGCA
Length: 50 nucleotides
Bulged bases: 4V7E|1|Ad|U|133, 4V7E|1|Ad|G|134, 4V7E|1|Ad|C|135, 4V7E|1|Ad|A|176, 4V7E|1|Ad|U|270
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V7E|1|Ad|U|126
4V7E|1|Ad|G|127
4V7E|1|Ad|G|128
4V7E|1|Ad|U|129
4V7E|1|Ad|A|130
4V7E|1|Ad|C|131
4V7E|1|Ad|G|132
4V7E|1|Ad|U|133
4V7E|1|Ad|G|134
4V7E|1|Ad|C|135
4V7E|1|Ad|U|136
4V7E|1|Ad|A|137
4V7E|1|Ad|C|138
4V7E|1|Ad|U|139
4V7E|1|Ad|C|140
4V7E|1|Ad|G|141
*
4V7E|1|Ad|C|170
4V7E|1|Ad|G|171
4V7E|1|Ad|U|172
4V7E|1|Ad|G|173
4V7E|1|Ad|C|174
4V7E|1|Ad|A|175
4V7E|1|Ad|A|176
4V7E|1|Ad|C|177
4V7E|1|Ad|A|178
4V7E|1|Ad|A|179
4V7E|1|Ad|A|180
4V7E|1|Ad|C|181
4V7E|1|Ad|C|182
*
4V7E|1|Ad|G|199
4V7E|1|Ad|C|200
4V7E|1|Ad|G|201
*
4V7E|1|Ad|C|266
4V7E|1|Ad|G|267
4V7E|1|Ad|G|268
4V7E|1|Ad|A|269
4V7E|1|Ad|U|270
4V7E|1|Ad|C|271
4V7E|1|Ad|G|272
4V7E|1|Ad|C|273
4V7E|1|Ad|A|274
4V7E|1|Ad|C|275
*
4V7E|1|Ad|G|289
4V7E|1|Ad|C|290
4V7E|1|Ad|G|291
4V7E|1|Ad|A|292
4V7E|1|Ad|C|293
4V7E|1|Ad|G|294
4V7E|1|Ad|C|295
4V7E|1|Ad|A|296

Current chains

Chain Ad: 18S ribosomal RNA

Nearby chains

Chain BE: 40S ribosomal protein S4E
Chain BG: 40S ribosomal protein S6

J5_4V7E_007