J5_4V7E_008
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AGAAGACC*GGAUUACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|2403, 4V7E|1|Aa|A|2819, 4V7E|1|Aa|U|2875, 4V7E|1|Aa|U|2980, 4V7E|1|Aa|U|2981
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|A|2398
4V7E|1|Aa|G|2399
4V7E|1|Aa|A|2400
4V7E|1|Aa|A|2401
4V7E|1|Aa|G|2402
4V7E|1|Aa|A|2403
4V7E|1|Aa|C|2404
4V7E|1|Aa|C|2405
*
4V7E|1|Aa|G|2817
4V7E|1|Aa|G|2818
4V7E|1|Aa|A|2819
4V7E|1|Aa|U|2820
4V7E|1|Aa|U|2821
4V7E|1|Aa|A|2822
4V7E|1|Aa|C|2823
4V7E|1|Aa|U|2824
4V7E|1|Aa|G|2825
*
4V7E|1|Aa|C|2869
4V7E|1|Aa|U|2870
4V7E|1|Aa|U|2871
4V7E|1|Aa|C|2872
4V7E|1|Aa|G|2873
4V7E|1|Aa|A|2874
4V7E|1|Aa|U|2875
4V7E|1|Aa|G|2876
4V7E|1|Aa|U|2877
*
4V7E|1|Aa|G|2954
4V7E|1|Aa|U|2955
4V7E|1|Aa|U|2956
4V7E|1|Aa|U|2957
4V7E|1|Aa|A|2958
4V7E|1|Aa|G|2959
*
4V7E|1|Aa|U|2977
4V7E|1|Aa|A|2978
4V7E|1|Aa|G|2979
4V7E|1|Aa|U|2980
4V7E|1|Aa|U|2981
4V7E|1|Aa|U|2982
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ae
- Transfer RNA; tRNA
- Chain CA
- 60S ribosomal protein L2
- Chain CB
- 60S ribosomal protein L3
- Chain CC
- 60S ribosomal protein L4
- Chain CI
- 60S ribosomal protein L16
- Chain CP
- 60S ribosomal protein L22
- Chain Cb
- 60S ribosomal protein L29E
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