J5_4V7E_009
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 27 nucleotides
- Bulged bases
- 4V7E|1|Ad|U|56, 4V7E|1|Ad|A|94, 4V7E|1|Ad|C|428
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Ad|C|54
4V7E|1|Ad|A|55
4V7E|1|Ad|U|56
4V7E|1|Ad|G|57
*
4V7E|1|Ad|C|91
4V7E|1|Ad|G|92
4V7E|1|Ad|A|93
4V7E|1|Ad|A|94
4V7E|1|Ad|U|95
4V7E|1|Ad|G|96
4V7E|1|Ad|G|97
4V7E|1|Ad|C|98
*
4V7E|1|Ad|G|390
4V7E|1|Ad|A|391
4V7E|1|Ad|G|392
*
4V7E|1|Ad|C|413
4V7E|1|Ad|A|414
4V7E|1|Ad|C|415
4V7E|1|Ad|A|416
4V7E|1|Ad|U|417
*
4V7E|1|Ad|A|424
4V7E|1|Ad|A|425
4V7E|1|Ad|G|426
4V7E|1|Ad|G|427
4V7E|1|Ad|C|428
4V7E|1|Ad|A|429
4V7E|1|Ad|G|430
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BG
- 40S ribosomal protein S6
- Chain BJ
- 40S ribosomal protein S4
- Chain BY
- 40S ribosomal protein S24E
- Chain CV
- 60S ribosomal protein L14
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