J5_4V7I_007

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7I_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1817

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V7I|1|BA|C|36
4V7I|1|BA|U|37
4V7I|1|BA|G|38
4V7I|1|BA|G|39
*
4V7I|1|BA|C|403
4V7I|1|BA|G|404
4V7I|1|BA|U|405
4V7I|1|BA|G|406
*
4V7I|1|BA|C|436
4V7I|1|BA|U|437
4V7I|1|BA|U|438
4V7I|1|BA|U|439
4V7I|1|BA|C|440
*
4V7I|1|BA|G|497
4V7I|1|BA|A|498
4V7I|1|BA|A|499
4V7I|1|BA|G|500
*
4V7I|1|BA|C|545
4V7I|1|BA|A|546
4V7I|1|BA|A|547
4V7I|1|BA|G|548

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12