J5_4V7I_010

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4V7I|1|A8|A|2060, 4V7I|1|A8|A|2062, 4V7I|1|A8|A|2448, 4V7I|1|A8|G|2502, 4V7I|1|A8|U|2585, 4V7I|1|A8|U|2609, 4V7I|1|A8|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7I|1|A8|G|2057
4V7I|1|A8|A|2058
4V7I|1|A8|A|2059
4V7I|1|A8|A|2060
4V7I|1|A8|G|2061
4V7I|1|A8|A|2062
4V7I|1|A8|C|2063
4V7I|1|A8|C|2064
*
4V7I|1|A8|G|2446
4V7I|1|A8|G|2447
4V7I|1|A8|A|2448
4V7I|1|A8|U|2449
4V7I|1|A8|A|2450
4V7I|1|A8|A|2451
4V7I|1|A8|C|2452
4V7I|1|A8|A|2453
*
4V7I|1|A8|U|2500
4V7I|1|A8|C|2501
4V7I|1|A8|G|2502
4V7I|1|A8|A|2503
4V7I|1|A8|U|2504
4V7I|1|A8|G|2505
4V7I|1|A8|U|2506
*
4V7I|1|A8|G|2583
4V7I|1|A8|U|2584
4V7I|1|A8|U|2585
4V7I|1|A8|U|2586
4V7I|1|A8|A|2587
4V7I|1|A8|G|2588
*
4V7I|1|A8|C|2606
4V7I|1|A8|G|2607
4V7I|1|A8|G|2608
4V7I|1|A8|U|2609
4V7I|1|A8|C|2610
4V7I|1|A8|C|2611

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L32

Chain A6

50S ribosomal protein L2

Chain AD

50S ribosomal protein L3

Chain AE

50S ribosomal protein L4

Chain AL

50S ribosomal protein L15