J5_4V7J_002

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAAC*GGGUCGG*CGAGUAC*GGAAUCUG*UAAG

Length

32 nucleotides

Bulged bases

4V7J|1|AA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7J|1|AA|C|268
4V7J|1|AA|U|269
4V7J|1|AA|A|270
4V7J|1|AA|A|271
4V7J|1|AA|A|271|||A
4V7J|1|AA|C|271|||B
*
4V7J|1|AA|G|271|||V
4V7J|1|AA|G|271|||W
4V7J|1|AA|G|271|||X
4V7J|1|AA|U|271|||Y
4V7J|1|AA|C|271|||Z
4V7J|1|AA|G|272
4V7J|1|AA|G|272|||B
*
4V7J|1|AA|C|366
4V7J|1|AA|G|370
4V7J|1|AA|A|371
4V7J|1|AA|G|372
4V7J|1|AA|U|373
4V7J|1|AA|A|374
4V7J|1|AA|C|375
*
4V7J|1|AA|G|399
4V7J|1|AA|G|400
4V7J|1|AA|A|401
4V7J|1|AA|A|402
4V7J|1|AA|U|403
4V7J|1|AA|C|404
4V7J|1|AA|U|405
4V7J|1|AA|G|406
*
4V7J|1|AA|U|421
4V7J|1|AA|A|422
4V7J|1|AA|A|423
4V7J|1|AA|G|424

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AI

50S ribosomal protein L9