3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
4V7L|1|AA|A|109, 4V7L|1|AA|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V7L_002 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.1158
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4V7L|1|AA|C|58
4V7L|1|AA|A|59
4V7L|1|AA|A|60
4V7L|1|AA|G|61
*
4V7L|1|AA|C|106
4V7L|1|AA|G|107
4V7L|1|AA|G|108
4V7L|1|AA|A|109
4V7L|1|AA|C|110
4V7L|1|AA|G|111
4V7L|1|AA|G|112
4V7L|1|AA|G|113
*
4V7L|1|AA|C|314
4V7L|1|AA|A|315
4V7L|1|AA|G|316
*
4V7L|1|AA|C|337
4V7L|1|AA|A|338
4V7L|1|AA|C|339
*
4V7L|1|AA|G|350
4V7L|1|AA|G|351
4V7L|1|AA|C|352
4V7L|1|AA|A|353
4V7L|1|AA|G|354

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AT
30S ribosomal protein S20
Chain BO
50S ribosomal protein L14
Chain BT
50S ribosomal protein L19

Coloring options:


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