J5_4V7R_001
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 4V7R|1|A1|A|511, 4V7R|1|A1|G|540, 4V7R|1|A1|A|541, 4V7R|1|A1|A|542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7R|1|A1|C|31
4V7R|1|A1|U|32
4V7R|1|A1|U|33
4V7R|1|A1|G|34
4V7R|1|A1|U|35
*
4V7R|1|A1|A|473
4V7R|1|A1|A|474
4V7R|1|A1|A|475
4V7R|1|A1|U|476
4V7R|1|A1|A|477
4V7R|1|A1|A|478
4V7R|1|A1|C|479
*
4V7R|1|A1|G|509
4V7R|1|A1|G|510
4V7R|1|A1|A|511
4V7R|1|A1|A|512
4V7R|1|A1|U|513
4V7R|1|A1|G|514
4V7R|1|A1|A|515
4V7R|1|A1|G|516
*
4V7R|1|A1|C|536
4V7R|1|A1|G|537
4V7R|1|A1|A|538
4V7R|1|A1|G|539
4V7R|1|A1|G|540
4V7R|1|A1|A|541
4V7R|1|A1|A|542
4V7R|1|A1|C|543
4V7R|1|A1|A|544
4V7R|1|A1|A|545
4V7R|1|A1|U|546
*
4V7R|1|A1|A|592
4V7R|1|A1|U|593
4V7R|1|A1|A|594
4V7R|1|A1|G|595
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain AE
- 40S ribosomal protein S9-A
- Chain AP
- 40S ribosomal protein S23
Coloring options: