J5_4V7R_003
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAUCU*AGAUGUAUU*ACUUUUCGAAUCG*CGAUGGUU
- Length
- 64 nucleotides
- Bulged bases
- 4V7R|1|A1|U|128, 4V7R|1|A1|C|130, 4V7R|1|A1|C|131, 4V7R|1|A1|U|132, 4V7R|1|A1|U|133, 4V7R|1|A1|U|134, 4V7R|1|A1|A|135, 4V7R|1|A1|C|136, 4V7R|1|A1|U|137, 4V7R|1|A1|A|140, 4V7R|1|A1|U|141, 4V7R|1|A1|U|178, 4V7R|1|A1|U|260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7R|1|A1|A|124
4V7R|1|A1|U|125
4V7R|1|A1|A|126
4V7R|1|A1|G|127
4V7R|1|A1|U|128
4V7R|1|A1|U|129
4V7R|1|A1|C|130
4V7R|1|A1|C|131
4V7R|1|A1|U|132
4V7R|1|A1|U|133
4V7R|1|A1|U|134
4V7R|1|A1|A|135
4V7R|1|A1|C|136
4V7R|1|A1|U|137
4V7R|1|A1|A|138
4V7R|1|A1|C|139
4V7R|1|A1|A|140
4V7R|1|A1|U|141
4V7R|1|A1|G|142
4V7R|1|A1|G|143
*
4V7R|1|A1|C|172
4V7R|1|A1|A|173
4V7R|1|A1|U|174
4V7R|1|A1|G|175
4V7R|1|A1|C|176
4V7R|1|A1|U|177
4V7R|1|A1|U|178
4V7R|1|A1|A|179
4V7R|1|A1|A|180
4V7R|1|A1|A|181
4V7R|1|A1|A|182
4V7R|1|A1|U|183
4V7R|1|A1|C|184
4V7R|1|A1|U|185
*
4V7R|1|A1|A|200
4V7R|1|A1|G|201
4V7R|1|A1|A|202
4V7R|1|A1|U|203
4V7R|1|A1|G|204
4V7R|1|A1|U|205
4V7R|1|A1|A|206
4V7R|1|A1|U|207
4V7R|1|A1|U|208
*
4V7R|1|A1|A|257
4V7R|1|A1|C|258
4V7R|1|A1|U|259
4V7R|1|A1|U|260
4V7R|1|A1|U|261
4V7R|1|A1|U|262
4V7R|1|A1|C|263
4V7R|1|A1|G|264
4V7R|1|A1|A|265
4V7R|1|A1|A|266
4V7R|1|A1|U|267
4V7R|1|A1|C|268
4V7R|1|A1|G|269
*
4V7R|1|A1|C|286
4V7R|1|A1|G|287
4V7R|1|A1|A|288
4V7R|1|A1|U|289
4V7R|1|A1|G|290
4V7R|1|A1|G|291
4V7R|1|A1|U|292
4V7R|1|A1|U|293
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain Ad
- Unassigned secondary structure
- Chain Ah
- Unassigned secondary structure
Coloring options: