J5_4V7R_005
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAGGU*AUCGA*UAAGAG
- Length
- 31 nucleotides
- Bulged bases
- 4V7R|1|B1|U|719, 4V7R|1|B1|A|720, 4V7R|1|B1|U|748, 4V7R|1|B1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7R|1|B1|C|675
4V7R|1|B1|G|676
4V7R|1|B1|A|677
4V7R|1|B1|G|678
*
4V7R|1|B1|C|702
4V7R|1|B1|G|703
4V7R|1|B1|U|704
4V7R|1|B1|A|705
4V7R|1|B1|A|706
*
4V7R|1|B1|U|713
4V7R|1|B1|G|714
4V7R|1|B1|A|715
4V7R|1|B1|A|716
4V7R|1|B1|C|717
4V7R|1|B1|G|718
4V7R|1|B1|U|719
4V7R|1|B1|A|720
4V7R|1|B1|G|721
4V7R|1|B1|G|722
4V7R|1|B1|U|723
*
4V7R|1|B1|A|747
4V7R|1|B1|U|748
4V7R|1|B1|C|749
4V7R|1|B1|G|750
4V7R|1|B1|A|751
*
4V7R|1|B1|U|782
4V7R|1|B1|A|783
4V7R|1|B1|A|784
4V7R|1|B1|G|785
4V7R|1|B1|A|786
4V7R|1|B1|G|787
Current chains
- Chain B1
- 25S ribosomal RNA
Nearby chains
- Chain BD
- 60S ribosomal protein L4-A
- Chain BR
- 60S ribosomal protein L18
- Chain BY
- 60S ribosomal protein L28
- Chain Bp
- Unassigned secondary structure
- Chain Br
- Unassigned secondary structure
Coloring options: