J5_4V7R_015

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU

Length

38 nucleotides

Bulged bases

4V7R|1|D1|A|2402, 4V7R|1|D1|A|2817, 4V7R|1|D1|C|2821, 4V7R|1|D1|G|2871, 4V7R|1|D1|U|2873, 4V7R|1|D1|U|2978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|D1|A|2399
4V7R|1|D1|G|2400
4V7R|1|D1|A|2401
4V7R|1|D1|A|2402
4V7R|1|D1|G|2403
4V7R|1|D1|A|2404
4V7R|1|D1|C|2405
4V7R|1|D1|C|2406
*
4V7R|1|D1|G|2815
4V7R|1|D1|G|2816
4V7R|1|D1|A|2817
4V7R|1|D1|U|2818
4V7R|1|D1|A|2819
4V7R|1|D1|A|2820
4V7R|1|D1|C|2821
4V7R|1|D1|U|2822
4V7R|1|D1|G|2823
*
4V7R|1|D1|C|2867
4V7R|1|D1|U|2868
4V7R|1|D1|U|2869
4V7R|1|D1|C|2870
4V7R|1|D1|G|2871
4V7R|1|D1|A|2872
4V7R|1|D1|U|2873
4V7R|1|D1|G|2874
4V7R|1|D1|U|2875
*
4V7R|1|D1|G|2952
4V7R|1|D1|U|2953
4V7R|1|D1|U|2954
4V7R|1|D1|U|2955
4V7R|1|D1|A|2956
4V7R|1|D1|G|2957
*
4V7R|1|D1|U|2975
4V7R|1|D1|A|2976
4V7R|1|D1|G|2977
4V7R|1|D1|U|2978
4V7R|1|D1|U|2979
4V7R|1|D1|U|2980

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L2

Chain DC

60S ribosomal protein L3

Chain DD

60S ribosomal protein L4-A