Loop J5_4V7R

3D structure

PDB id: 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description: Yeast 80S ribosome.
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å

Loop

Sequence: AACUUUGG*CUUUCCUUC*GGACUUUU*AAUAGAAUAGGACGUU*AUCGUAAUGAUU
Length: 53 nucleotides
Bulged bases: 4V7R|1|A1|U|694, 4V7R|1|A1|U|695, 4V7R|1|A1|C|696, 4V7R|1|A1|C|697, 4V7R|1|A1|U|813, 4V7R|1|A1|G|815, 4V7R|1|A1|A|856
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V7R|1|A1|A|635
4V7R|1|A1|A|636
4V7R|1|A1|C|637
4V7R|1|A1|U|638
4V7R|1|A1|U|639
4V7R|1|A1|U|640
4V7R|1|A1|G|641
4V7R|1|A1|G|642
*
4V7R|1|A1|C|692
4V7R|1|A1|U|693
4V7R|1|A1|U|694
4V7R|1|A1|U|695
4V7R|1|A1|C|696
4V7R|1|A1|C|697
4V7R|1|A1|U|698
4V7R|1|A1|U|699
4V7R|1|A1|C|700
*
4V7R|1|A1|G|738
4V7R|1|A1|G|739
4V7R|1|A1|A|740
4V7R|1|A1|C|741
4V7R|1|A1|U|742
4V7R|1|A1|U|743
4V7R|1|A1|U|744
4V7R|1|A1|U|745
*
4V7R|1|A1|A|806
4V7R|1|A1|A|807
4V7R|1|A1|U|808
4V7R|1|A1|A|809
4V7R|1|A1|G|810
4V7R|1|A1|A|811
4V7R|1|A1|A|812
4V7R|1|A1|U|813
4V7R|1|A1|A|814
4V7R|1|A1|G|815
4V7R|1|A1|G|816
4V7R|1|A1|A|817
4V7R|1|A1|C|818
4V7R|1|A1|G|819
4V7R|1|A1|U|820
4V7R|1|A1|U|821
*
4V7R|1|A1|A|850
4V7R|1|A1|U|851
4V7R|1|A1|C|852
4V7R|1|A1|G|853
4V7R|1|A1|U|854
4V7R|1|A1|A|855
4V7R|1|A1|A|856
4V7R|1|A1|U|857
4V7R|1|A1|G|858
4V7R|1|A1|A|859
4V7R|1|A1|U|860
4V7R|1|A1|U|861

Current chains

Chain A1: 18S ribosomal RNA

Nearby chains

Chain AF: 40S ribosomal protein S11
Chain AG: 40S ribosomal protein S13
Chain AO: 40S ribosomal protein S22-A
Chain Ab: Unassigned secondary structure
Chain BS: 60S ribosomal protein L19

J5_4V7R_017