J5_4V7Y_010

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7Y_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0887

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V7Y|1|CA|C|36
4V7Y|1|CA|U|37
4V7Y|1|CA|G|38
4V7Y|1|CA|G|39
*
4V7Y|1|CA|C|403
4V7Y|1|CA|U|404
4V7Y|1|CA|U|405
4V7Y|1|CA|G|406
*
4V7Y|1|CA|C|436
4V7Y|1|CA|U|437
4V7Y|1|CA|G|438
4V7Y|1|CA|A|439
4V7Y|1|CA|A|441
4V7Y|1|CA|C|442
*
4V7Y|1|CA|G|492
4V7Y|1|CA|G|493
4V7Y|1|CA|U|494
4V7Y|1|CA|A|495
4V7Y|1|CA|A|496
4V7Y|1|CA|U|498
4V7Y|1|CA|A|499
4V7Y|1|CA|G|500
*
4V7Y|1|CA|C|545
4V7Y|1|CA|G|546
4V7Y|1|CA|A|547
4V7Y|1|CA|G|548

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12