J5_4V7Z_012

3D structure

PDB id

4V7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V7Z|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7Z_012 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0467

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V7Z|1|DA|C|47
4V7Z|1|DA|G|48
4V7Z|1|DA|A|49
4V7Z|1|DA|U|50
4V7Z|1|DA|G|51
4V7Z|1|DA|A|52
4V7Z|1|DA|A|53
4V7Z|1|DA|G|54
*
4V7Z|1|DA|C|116
4V7Z|1|DA|G|117
4V7Z|1|DA|A|118
4V7Z|1|DA|A|119
4V7Z|1|DA|U|120
4V7Z|1|DA|G|121
*
4V7Z|1|DA|C|130
4V7Z|1|DA|G|131
*
4V7Z|1|DA|C|148
4V7Z|1|DA|A|149
4V7Z|1|DA|C|150
*
4V7Z|1|DA|G|176
4V7Z|1|DA|G|177
4V7Z|1|DA|G|178

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23