J5_4V83_003

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V83|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V83_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0706

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V83|1|BA|C|47
4V83|1|BA|G|48
4V83|1|BA|A|49
4V83|1|BA|U|50
4V83|1|BA|G|51
4V83|1|BA|A|52
4V83|1|BA|A|53
4V83|1|BA|G|54
*
4V83|1|BA|C|116
4V83|1|BA|G|117
4V83|1|BA|A|118
4V83|1|BA|A|119
4V83|1|BA|U|120
4V83|1|BA|G|121
*
4V83|1|BA|C|130
4V83|1|BA|G|131
*
4V83|1|BA|C|148
4V83|1|BA|A|149
4V83|1|BA|C|150
*
4V83|1|BA|G|176
4V83|1|BA|G|177
4V83|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23