J5_4V84_001

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V84_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0978

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V84|1|AA|C|36
4V84|1|AA|U|37
4V84|1|AA|G|38
4V84|1|AA|G|39
*
4V84|1|AA|C|403
4V84|1|AA|U|404
4V84|1|AA|U|405
4V84|1|AA|G|406
*
4V84|1|AA|C|436
4V84|1|AA|U|437
4V84|1|AA|G|438
4V84|1|AA|A|439
4V84|1|AA|A|440
4V84|1|AA|C|442
*
4V84|1|AA|G|492
4V84|1|AA|G|493
4V84|1|AA|U|494
4V84|1|AA|A|495
4V84|1|AA|A|496
4V84|1|AA|U|497
4V84|1|AA|A|498
4V84|1|AA|G|500
*
4V84|1|AA|C|545
4V84|1|AA|G|546
4V84|1|AA|A|547
4V84|1|AA|G|548

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain DH

50S ribosomal protein L9