J5_4V87_015

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V87|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V87_015 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0626

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V87|1|DA|C|47
4V87|1|DA|G|48
4V87|1|DA|A|49
4V87|1|DA|U|50
4V87|1|DA|G|51
4V87|1|DA|A|52
4V87|1|DA|A|53
4V87|1|DA|G|54
*
4V87|1|DA|C|116
4V87|1|DA|G|117
4V87|1|DA|A|118
4V87|1|DA|A|119
4V87|1|DA|U|120
4V87|1|DA|G|121
*
4V87|1|DA|C|130
4V87|1|DA|G|131
*
4V87|1|DA|C|148
4V87|1|DA|A|149
4V87|1|DA|C|150
*
4V87|1|DA|G|176
4V87|1|DA|G|177
4V87|1|DA|G|178

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23