J5_4V88_003
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 4V88|1|A1|U|719, 4V88|1|A1|A|784, 4V88|1|A1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V88_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0441
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_23272.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A1|C|675
4V88|1|A1|G|676
4V88|1|A1|A|677
4V88|1|A1|G|678
*
4V88|1|A1|C|702
4V88|1|A1|G|703
4V88|1|A1|U|704
4V88|1|A1|A|705
4V88|1|A1|A|706
*
4V88|1|A1|U|713
4V88|1|A1|G|714
4V88|1|A1|A|715
4V88|1|A1|A|716
4V88|1|A1|C|717
4V88|1|A1|G|718
4V88|1|A1|U|719
4V88|1|A1|A|720
4V88|1|A1|G|721
*
4V88|1|A1|C|749
4V88|1|A1|G|750
4V88|1|A1|A|751
*
4V88|1|A1|U|782
4V88|1|A1|A|783
4V88|1|A1|A|784
4V88|1|A1|G|785
4V88|1|A1|A|786
4V88|1|A1|G|787
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4-A
- Chain BL
- 60S ribosomal protein L13-A
- Chain BQ
- 60S ribosomal protein L18-A
- Chain Ba
- 60S ribosomal protein L28
- Chain Bb
- 60S ribosomal protein L29
- Chain Bi
- 60S ribosomal protein L36-A
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