Motif J5_56629.1 Version J5_56629.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | break | 18 | 19 | 20 | break | 21 | 22 | 23 | 24 | 1-24 | 3-6 | 4-5 | 9-10 | 17-18 | 20-21 | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_9AXU_003 | 9AXU | 0.0642 | 3 | 2 | LSU rRNA | C | 700 | G | 701 | A | 702 | G | 703 | * | C | 729 | G | 730 | A | 731 | A | 732 | A | 733 | * | U | 740 | G | 741 | A | 742 | A | 743 | U | 744 | G | 745 | A | 747 | G | 748 | * | C | 777 | G | 778 | A | 779 | * | U | 814 | A | 815 | A | 818 | G | 819 | cWW | tSs | cWW | cWW | cWW | cWW |
| 2 | J5_8OI5_003 | 8OI5 | 0.0000 | 3 | 1 | LSU rRNA | C | 673 | G | 674 | A | 675 | G | 676 | * | C | 700 | G | 701 | U | 702 | A | 703 | A | 704 | * | U | 711 | G | 712 | A | 713 | A | 714 | C | 715 | G | 716 | A | 718 | G | 719 | * | C | 745 | G | 746 | A | 747 | * | U | 778 | A | 779 | A | 782 | G | 783 | cWW | ntSs | cWW | cWW | cWW | cWW |
| 3 | J5_8P9A_012 | 8P9A | 0.0773 | 3 | AR | LSU rRNA | C | 675 | G | 676 | A | 677 | G | 678 | * | C | 702 | G | 703 | U | 704 | A | 705 | A | 706 | * | U | 713 | G | 714 | A | 715 | A | 716 | C | 717 | G | 718 | A | 720 | G | 721 | * | C | 749 | G | 750 | A | 751 | * | U | 782 | A | 783 | A | 786 | G | 787 | cWW | ntSs | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAG*CGAAA*UGAAUGCAG*CGA*UAAGAG | 1 |
| CGAG*CGUAA*UGAACGAAG*CGA*UAAGAG | 1 |
| CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GAA*GAAUGCA*G*AAGA | 1 |
| GA*GUA*GAACGAA*G*AAGA | 1 |
| GA*GUA*GAACGUA*G*AAGA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.05 | Max 0.09
Coloring options: