J5_4V88_008

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V88|1|A2|A|93, 4V88|1|A2|C|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V88_008 not in the Motif Atlas

Homologous match to J5_8P9A_017

Geometric discrepancy: 0.0623

The information below is about J5_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V88|1|A2|C|54
4V88|1|A2|A|55
4V88|1|A2|U|56
4V88|1|A2|G|57
*
4V88|1|A2|C|90
4V88|1|A2|G|91
4V88|1|A2|A|92
4V88|1|A2|A|93
4V88|1|A2|U|94
4V88|1|A2|G|95
4V88|1|A2|G|96
4V88|1|A2|C|97
*
4V88|1|A2|G|386
4V88|1|A2|A|387
4V88|1|A2|G|388
*
4V88|1|A2|C|409
4V88|1|A2|A|410
4V88|1|A2|C|411
*
4V88|1|A2|G|422
4V88|1|A2|G|423
4V88|1|A2|C|424
4V88|1|A2|A|425
4V88|1|A2|G|426

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AG

40S ribosomal protein S6-A

Chain AI

40S ribosomal protein S8-A

Chain AJ

40S ribosomal protein S9-A

Chain AY

40S ribosomal protein S24-A

Chain BV

60S ribosomal protein L23-A

Chain BW

60S ribosomal protein L24-A