Motif J5_58574.2 Version J5_58574.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8		9		10		11	break		12		13		14	break		15		16		17	break		18		19		20		21	1-21	3-6	4-5	10-13	11-12	11-20	12-20	14-15	16-19	17-18
1	J5_8GLP_008	8GLP	0.1111	2	S2	SSU rRNA	C	53	A	54	U	55	G	56	*	C	89	G	90	A	91	PSU	93	G	94	G	95	C	96	*	G	434	A	435	OMG	436	*	C	457	A	458	C	459	*	G	470	G	471	A	473	G	474	cWW	ntWS	cWW	ncWW	cWW	csS	tsS	cWW	cWW	cWW
2	J5_8CRE_020	8CRE	0.0000	2	CM	SSU rRNA	C	54	A	55	U	56	G	57	*	C	90	G	91	A	92	U	94	G	95	G	96	C	97	*	G	384	A	385	G	386	*	C	407	A	408	C	409	*	G	420	G	421	A	423	G	424	cWW	ntWS	cWW	cWW	cWW	csS	tsS	cWW	cWW	cWW
3	J5_9H3G_009	9H3G	0.0703	2	h1	SSU rRNA	C	54	A	55	U	56	G	57	*	C	91	G	92	A	93	PSU	95	G	96	G	97	C	98	*	G	388	A	389	OMG	390	*	C	411	A	412	C	413	*	G	424	G	425	A	427	G	428	cWW	ntWS	cWW	cWW	cWW	csS	tsS	cWW	cWW	cWW
4	J5_8P9A_017	8P9A	0.0900	2	sR	SSU rRNA	C	54	A	55	U	56	G	57	*	C	90	G	91	A	92	U	94	G	95	G	96	C	97	*	G	386	A	387	G	388	*	C	409	A	410	C	411	*	G	422	G	423	A	425	G	426	cWW	tWS	cWW	cWW	cWW	csS	tsS	cWW	cWW	cWW
5	J5_4LFB_002	4LFB	0.1439	2	A	SSU rRNA	C	58	A	59	A	60	G	61	*	C	106	G	107	G	108	C	110	G	111	G	112	G	113	*	C	314	A	315	G	316	*	C	337	A	338	C	339	*	G	350	G	351	A	353	G	354	cWW	ntSs	cWW	cWW	cWW	csS	ntsS	cWW	cWW	cWW
6	J5_8B0X_003	8B0X	0.1665	2	A	SSU rRNA	C	58	A	59	A	60	G	61	*	C	106	G	107	G	108	C	110	G	111	G	112	G	113	*	C	314	A	315	C	316	*	G	337	A	338	C	339	*	G	350	G	351	A	353	G	354	cWW	ntSs	cWW	cWW	cWW	csS	ntsS	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUGCGAA(PSU)GGCGAOMGCACGGCAG	2
CAUGCGAAUGGCGAGCACGGCAG	2
CAAGCGGACGGGCAGCACGGCAG	1
CAAGCGGACGGGCACGACGGCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUGAA(PSU)GGAAGCA	2
AUGAAUGGAAGCA	2
AAGGACGGAAGCA	2

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Heat map statistics: Min 0.07 | Avg 0.12 | Max 0.20

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Coloring options: Nucleotide numbers

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