J5_4V88_018
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 4V88|1|A6|A|538, 4V88|1|A6|A|541, 4V88|1|A6|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_37291.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-F-F-F-F-cWW-F-cWW-F-cWW-F-F-tHS-cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A6|C|31
4V88|1|A6|U|32
4V88|1|A6|U|33
4V88|1|A6|G|34
4V88|1|A6|U|35
*
4V88|1|A6|A|473
4V88|1|A6|A|474
4V88|1|A6|A|475
4V88|1|A6|U|476
4V88|1|A6|A|477
4V88|1|A6|A|478
4V88|1|A6|C|479
*
4V88|1|A6|G|509
4V88|1|A6|G|510
4V88|1|A6|A|511
4V88|1|A6|A|512
4V88|1|A6|U|513
4V88|1|A6|G|514
4V88|1|A6|A|515
4V88|1|A6|G|516
*
4V88|1|A6|C|536
4V88|1|A6|G|537
4V88|1|A6|A|538
4V88|1|A6|G|539
4V88|1|A6|G|540
4V88|1|A6|A|541
4V88|1|A6|A|542
4V88|1|A6|C|543
4V88|1|A6|A|544
4V88|1|A6|A|545
4V88|1|A6|U|546
*
4V88|1|A6|A|592
4V88|1|A6|U|593
4V88|1|A6|A|594
4V88|1|A6|G|595
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CJ
- 40S ribosomal protein S9-A
- Chain CX
- 40S ribosomal protein S23-A
- Chain Ce
- 40S ribosomal protein S30-A
Coloring options: