Motif J5_37291.1 Version J5_37291.1 of this group appears in releases 3.80 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | break | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | break | 32 | 33 | 34 | 35 | 1-35 | 5-6 | 9-30 | 10-15 | 11-14 | 11-24 | 12-13 | 12-14 | 15-24 | 16-26 | 17-23 | 18-28 | 19-22 | 20-21 | 31-32 | |||||||||||||||||||||||||||||||||||
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1 | J5_8C3A_019 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | C | 31 | U | 32 | U | 33 | G | 34 | U | 35 | * | A | 471 | A | 472 | A | 473 | U | 474 | A | 475 | A | 476 | C | 477 | * | G | 507 | G | 508 | A | 509 | A | 510 | U | 511 | G | 512 | A | 513 | G | 514 | * | C | 534 | G | 535 | A | 536 | G | 537 | G | 538 | A | 539 | A | 540 | C | 541 | A | 542 | A | 543 | U | 544 | * | A | 590 | A | 591 | A | 592 | G | 593 | cWW | cWW | cWH | cwW | cWW | ncHH | cWW | ntHH | ntWH | tWH | cWW | tHS | cWW | cWW | |
2 | J5_4V88_018 | 4V88 | 0.4722 | 0 | A6 | SSU rRNA | C | 31 | U | 32 | U | 33 | G | 34 | U | 35 | * | A | 473 | A | 474 | A | 475 | U | 476 | A | 477 | A | 478 | C | 479 | * | G | 509 | G | 510 | A | 511 | A | 512 | U | 513 | G | 514 | A | 515 | G | 516 | * | C | 536 | G | 537 | A | 538 | G | 539 | G | 540 | A | 541 | A | 542 | C | 543 | A | 544 | A | 545 | U | 546 | * | A | 592 | U | 593 | A | 594 | G | 595 | cWW | cWW | cWH | cwW | cWW | cWW | ncWW | cHH | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AAAG | 1 |
CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUG*AAUAA*GAAUGA*GAGGAACAA*AA | 1 |
UUG*AAUAA*GAAUGA*GAGGAACAA*UA | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 |
---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-F-F-F-F-cWW-F-cWW-F-cWW-F-F-tHS-cWW-F-F-F
- Heat map statistics
- Min 0.47 | Avg 0.24 | Max 0.47
Coloring options: