#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 10 11 12break 13 14 15 16 17 18 19 20break 21 22 23 24 25 26 27 28 29 30 31break 32 33 34 351-355-69-3010-1511-1411-2412-1312-1415-2416-2617-2318-2819-2220-2131-32
1 J5_8C3A_0198C3A0.00000CM SSU rRNAC31U32U33G34U35*A471A472A473U474A475A476C477*G507G508A509A510U511G512A513G514*C534G535A536G537G538A539A540C541A542A543U544*A590A591A592G593cWWcWWcWHcwWcWWncHHcWWntHHntWHtWHcWWtHScWWcWW
2 J5_4V88_0184V880.47220A6 SSU rRNAC31U32U33G34U35*A473A474A475U476A477A478C479*G509G510A511A512U513G514A515G516*C536G537A538G539G540A541A542C543A544A545U546*A592U593A594G595cWWcWWcWHcwWcWWcWWncWWcHHtHScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AAAG1
CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG1
Non-Watson-Crick part of the motif
SequenceCounts
UUG*AAUAA*GAAUGA*GAGGAACAA*AA1
UUG*AAUAA*GAAUGA*GAGGAACAA*UA1

Release history

Release3.803.813.823.833.843.853.863.873.883.893.90
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-06
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-F-F-F-F-F-cWW-cWW-cWH-F-F-F-F-F-cWW-F-cWW-F-cWW-F-F-tHS-cWW-F-F-F
    Heat map statistics
    Min 0.47 | Avg 0.24 | Max 0.47
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