J5_4V8E_017

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAAC*GAAAAG

Length

26 nucleotides

Bulged bases

4V8E|1|CA|A|680

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8E|1|CA|C|625
4V8E|1|CA|G|626
4V8E|1|CA|A|627
4V8E|1|CA|G|628
*
4V8E|1|CA|C|650
4V8E|1|CA|G|651
4V8E|1|CA|U|652
4V8E|1|CA|A|653
4V8E|1|CA|G|654
*
4V8E|1|CA|C|661
4V8E|1|CA|G|662
4V8E|1|CA|A|663
4V8E|1|CA|G|664
*
4V8E|1|CA|C|676
4V8E|1|CA|G|677
4V8E|1|CA|C|678
4V8E|1|CA|A|679
4V8E|1|CA|A|680
4V8E|1|CA|A|681
4V8E|1|CA|C|682
*
4V8E|1|CA|G|699
4V8E|1|CA|A|700
4V8E|1|CA|A|701
4V8E|1|CA|A|702
4V8E|1|CA|A|703
4V8E|1|CA|G|704

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C8

50S ribosomal protein L35

Chain CF

50S ribosomal protein L4

Chain CO

50S ribosomal protein L15